API for arcolombo/TxDbLite
Lightweight SQLite-based annotation classes/packages for use with arkas
| Global functions | |
|---|---|
| .addSpikeInSubgroup | Source code Source code |
| .determineIdentical | Source code |
| .erccDbLiteMetadata | Source code Source code |
| .printIdentical | Source code |
| ArrayControlDbLite | Man page |
| ArrayControlDbLite-class | Man page |
| ERCC_annotated | Man page |
| EnsDbLite | Man page |
| EnsDbLite-class | Man page |
| ErccDbLite | Man page |
| ErccDbLite-class | Man page |
| GCcontent | Man page Source code |
| RepDbLite | Man page |
| RepDbLite-class | Man page |
| TxDbLite | Man page Source code |
| TxDbLite-class | Man page |
| TxDbLite-method | Man page |
| chrs | Man page Source code |
| colAsVector | Man page Source code |
| createAnnotationPackage | Man page Source code |
| dbconn,TxDbLite-method | Man page |
| ensDbLiteFromFasta | Man page Source code |
| ensDbLiteMetadata | Man page Source code |
| ensemblToReactome | Man page |
| ensembl_biotypes | Man page |
| erccDbLiteFromFasta | Man page Source code |
| fetchFromEnsembl | Man page Source code |
| findDupes | Man page Source code |
| genesBy | Man page |
| genesBy,TxDbLite-method | Man page |
| getAnnotationType | Man page Source code |
| getDupeSeq | Man page Source code |
| getEntrezIDs | Man page Source code |
| getFastaStub | Man page Source code |
| getGCcontent | Man page Source code |
| getHugoCache | Man page Source code |
| getMostRecentCacheBuild | Man page Source code |
| getOrgDetails | Man page Source code |
| getOrganismAbbreviation | Man page Source code |
| getReactomeCache | Man page Source code |
| getReactomeUrl | Man page Source code |
| getSupportedAbbreviations | Man page Source code |
| getSymbols | Man page Source code |
| getTxDbLiteName | Man page Source code |
| hugoCache | Man page |
| idStub | Man page Source code |
| indexIfNoneFound | Man page Source code |
| loadReactome | Man page Source code |
| makeArrayControlLitePkg | Man page Source code |
| makeEnsDbLitePkg | Man page Source code |
| makeErccDbLitePkg | Man page Source code |
| makeRepDbLitePkg | Man page Source code |
| mapHugo | Man page Source code |
| mapReactomeSets | Man page Source code |
| mapToReactome | Man page Source code |
| metadata,TxDbLite-method | Man page |
| mouse_repeat_biotypes | Man page |
| reactomeCache | Man page |
| reactomePathways | Man page |
| reactomeSets | Man page Source code |
| repDbLiteFromFasta | Man page Source code |
| repDbLiteFromMouseFasta | Man page Source code |
| repDbLiteMetaMousedata | Man page Source code |
| repDbLiteMetadata | Man page Source code |
| repeat_biotypes | Man page |
| show,TxDbLite-method | Man page |
| spikeinDbLiteFromFasta | Man page Source code |
| str2vec | Man page Source code |
| strpop | Man page Source code |
| strpush | Man page Source code |
| strshift | Man page Source code |
| strunshift | Man page Source code |
| supportedOrganismsForTxDbLite | Man page |
| transcriptsBy,TxDbLite-method | Man page |
| unannotatedTranscript | Man page |
| utils | Man page |
