repDbLiteFromFasta: functions to create a RepDbLite object (a stripped-down...
In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
View source: R/repDbLiteFromFasta.R
Description
functions to create a RepDbLite object (a stripped-down SQLite db) from
a specified RepBase FASTA file for a given version, species, and type(s). this will use biotype catalog designed for human species, but can possibly be used for mouse, though not recommended.
Usage
1
repDbLiteFromFasta(fastaFile, verbose = TRUE, dryRun = FALSE)
Arguments
fastaFile
the FASTA file to collate into a RepDbLite instance
verbose
make a lot of noise? (TRUE)
dryRun
boolean if false a sql database is created
arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.
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View source: R/repDbLiteFromFasta.R
Description
functions to create a RepDbLite object (a stripped-down SQLite db) from a specified RepBase FASTA file for a given version, species, and type(s). this will use biotype catalog designed for human species, but can possibly be used for mouse, though not recommended.
Usage
1 | repDbLiteFromFasta(fastaFile, verbose = TRUE, dryRun = FALSE)
|
Arguments
fastaFile |
the FASTA file to collate into a RepDbLite instance |
verbose |
make a lot of noise? (TRUE) |
dryRun |
boolean if false a sql database is created |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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