ensemblToReactome: Data frame of ENSEMBL transcript IDs and corresponding...
In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
Description
Usage
Format
Source
Description
Data frame of ENSEMBL transcript IDs and corresponding reactome pathway IDs, Reactome URL pathway-browser, reactome pathway name, and organism for numerous species including Mus musculus, Homo Sapiens and many more. This is used for enrichment activation analysis.
Usage
1
Format
A data frame full of reactome data
code: names of ENSEMBL IDs of transcripts and genes
term: Reactome ID pathway
URL: Reactome Pathway URL
name: Pathway name
from: Pathway Origin
organism: organism of pathway
Source
arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.
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Description Usage Format Source
Description
Data frame of ENSEMBL transcript IDs and corresponding reactome pathway IDs, Reactome URL pathway-browser, reactome pathway name, and organism for numerous species including Mus musculus, Homo Sapiens and many more. This is used for enrichment activation analysis.
Usage
1 |
Format
A data frame full of reactome data
code: names of ENSEMBL IDs of transcripts and genes
term: Reactome ID pathway
URL: Reactome Pathway URL
name: Pathway name
from: Pathway Origin
organism: organism of pathway
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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