getReactomeCache: Pulling Reactome mappings through biomaRt takes time. So we...

In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas

Description

Pulling Reactome mappings through biomaRt takes time. So we try not to do it. More specifically, try to only pull updates, and then only for new builds.

Usage

getReactomeCache(species = "Homo sapiens", build = 84)

Arguments

species	species for which to get mappings (Homo sapiens)
build	numeric ENSEMBL build (84 by default)

Value

a list of REACTOME terms mapped to ENSEMBL IDs (both tx and gene)

arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.