reactomeSets: using the cached Reactome databases, generate gene sets for...
In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
Description
Usage
Arguments
Value
Examples
Description
using the cached Reactome databases, generate gene sets for qusage etc.
Usage
1
2
reactomeSets(species = "Homo sapiens", type = c("transcript", "gene"),
mappedReactome = NULL)
Arguments
species
what species are the IDs from? (default:Homo sapiens)
type
transcript- or gene-level mappings? (default: transcript)
mappedReactome
list of the results output from mapToReactome, downstream to assemble the list into pathways.
Value
gene sets per Reactome term for this species
Examples
1
reactomeSets("Homo sapiens")
arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.
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Description Usage Arguments Value Examples
Description
using the cached Reactome databases, generate gene sets for qusage etc.
Usage
1 2 | reactomeSets(species = "Homo sapiens", type = c("transcript", "gene"),
mappedReactome = NULL)
|
Arguments
species |
what species are the IDs from? (default:Homo sapiens) |
type |
transcript- or gene-level mappings? (default: transcript) |
mappedReactome |
list of the results output from mapToReactome, downstream to assemble the list into pathways. |
Value
gene sets per Reactome term for this species
Examples
1 | reactomeSets("Homo sapiens")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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