getGCcontent: Get the GC content of every contig in a FASTA.
In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
Description
Usage
Arguments
Value
Functions
Description
Get the GC content of every contig in a FASTA.
Usage
1
2
3
getGCcontent(fastaFile)
GCcontent(seqs)
Arguments
fastaFile
the FASTA file.
seqs
a DNAStringSet, RNAStringSet, or similar
Value
a GRanges with a gc_content column.
a vector of GC proportions
Functions
-
GCcontent: helper function
arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.
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Description Usage Arguments Value Functions
Description
Get the GC content of every contig in a FASTA.
Usage
1 2 3 | getGCcontent(fastaFile)
GCcontent(seqs)
|
Arguments
fastaFile |
the FASTA file. |
seqs |
a DNAStringSet, RNAStringSet, or similar |
Value
a GRanges with a gc_content column.
a vector of GC proportions
Functions
-
GCcontent: helper function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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