config_alignment-class: Alignment settings and thresholds

Description Slots

Description

For details on inputs see main package documentation

Slots

thresholds

p-value thresholds for hit significanc

simulation

simulation parameters

substitution_matrix

the Smith-Waterman amino acid substitution matrix

dna2dna_maxspace

largest size of string to compare

indel_threshold

I don't remember what this does (FIXME: the fuck kind of documentation is this?)


arendsee/fagin documentation built on Aug. 27, 2019, 11:58 a.m.