make_format_translation_warning: Collate the warnings of a Biostrings::translate function
In arendsee/fagin: Annotate Orphan Genes
Description
Usage
Arguments
Details
Value
View source: R/cosmetics_warnings.R
Description
The Biostrings::translate function emits one warning for each CDS that is
not a multiple of 3. This function collates all these warnings into one.
Also it specifies the name of each sequence and the species from whch they
derive.
Usage
1
make_format_translation_warning(label = NULL)
Arguments
label
The species name, usually
node
Rmonad object wrapping the result of a Biostrings::translate function
Details
The warning is assumed to have the form:
"in 'x[[123]]': last 2 bases were ignored"
"in 'x[[456]]': last base was ignored"
Value
Rmonad An Rmonad object with a modified warning field
arendsee/fagin documentation built on Aug. 27, 2019, 11:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
View source: R/cosmetics_warnings.R
Description
The Biostrings::translate function emits one warning for each CDS that is not a multiple of 3. This function collates all these warnings into one. Also it specifies the name of each sequence and the species from whch they derive.
Usage
1 | make_format_translation_warning(label = NULL)
|
Arguments
label |
The species name, usually |
node |
Rmonad object wrapping the result of a Biostrings::translate function |
Details
The warning is assumed to have the form: "in 'x[[123]]': last 2 bases were ignored" "in 'x[[456]]': last base was ignored"
Value
Rmonad An Rmonad object with a modified warning field
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.