config_input-class: Paths to inputs and the focal species name
In arendsee/fagin: Annotate Orphan Genes
Description
For details on input requirements, see the main package documentation
Slots
gffnamed list of GFF3 files (.gff or gff3 extensions)
fnanamed list of genome files (fasta format)
synnamed list of synteny maps
treedirectory of phylogenetic tree
focal_speciesname of the focal species
query_gene_listfile containing query genes (e.g. orphan candidates)
control_gene_listfile containing control genes
arendsee/fagin documentation built on Aug. 27, 2019, 11:58 a.m.
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Description
For details on input requirements, see the main package documentation
Slots
gffnamed list of GFF3 files (.gff or gff3 extensions)
fnanamed list of genome files (fasta format)
synnamed list of synteny maps
treedirectory of phylogenetic tree
focal_speciesname of the focal species
query_gene_listfile containing query genes (e.g. orphan candidates)
control_gene_listfile containing control genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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