carma.S5 2: Calculate CARMA score LOH

Description Usage Arguments Value Examples

Description

This function will not be called directly by the user. The function is used by the carma.all function to calculate the CARMA score LOH, a measure of the extent of regional loss-of-heterozygosity.

Usage

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carma.S5(seg)

Arguments

seg

a data frame with copy number data corresponing to one region.

Value

A numeric score.

Examples

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segment <- test.data[[1]]
seg <- segment[segment$chr==1, ] 
carma.S5(seg)

arnevpladsen/CARMA documentation built on Dec. 19, 2021, 4:39 a.m.