readHeinzGraph: Convert HEINZ output to graph
In assaron/BioNet: Routines for the functional analysis of biological networks

Description Usage Arguments Value Author(s) Examples

Function to convert the HEINZ output to a graph object, or if the output is in matrix form, it will create a list of graphs. The function needs the node and the original network, from which the module is calculated.

1	readHeinzGraph(node.file, network, format=c("graphNEL", "igraph"))

`node.file`	Heinz node output file.
`network`	Original network from which Heinz input was created.
`format`	Graph format of output, either igraph or graphNEL.

Graph object.

Daniela Beisser

library(DLBCL)
data(interactome)
# precomputed Heinz output files
## Not run: lib <- file.path(.path.package("BioNet"), "extdata") 
module <- readHeinzGraph(node.file=file.path(lib, "lymphoma_nodes_001.txt.0.hnz"), network=interactome, format="graphNEL");
plotModule(module);

## End(Not run)