Description Usage Arguments Value Author(s)
runGoSeq
1 |
de.genes |
List of Differentially expressed IDs to test for GO term enrichment and depletion. |
all.genes |
List of IDs to use as the background. |
onto |
Which ontology to test, one of "GO:BP", "GO:MF" or "GO:CC". |
genome |
Which genome to use e.g. "hg19" - passed into getgo. |
ID |
Which type of ID e.g. "ensGene"- passed into getgo. |
rep |
Passed to the argument |
p.adj |
Which method of p value adjustment for multiple testing to use - for details see |
adj.p.val |
Which p value to use. |
bias.data |
Customised background for either 450k methylation data or alternative gene lengths. Should be a named vector of integers. |
Select background explicitly for those genes annotated to root term of ontology.
Hugh French
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.