regionsToIDs: regionsToIDs
In astatham/GOfish: Fishing for GO terms? SO ARE WE!
Description
Usage
Arguments
Value
Author(s)
Description
regionsToIDs
Usage
1
regionsToIDs(x, txdb, where=c("TSS", "gene"), within=100)
Arguments
x
A GRanges of regions of which to obtain the ID of genes contained within
txdb
A TranscriptDb made using makeTranscriptDb from the GenomicFeatures package
where
If "TSS", only genes whose transcription start site overlaps the regions in x are returned. If "gene" the whole gene is considered, not just the TSS.
within
If where is "TSS" then the number of basepairs around each TSS a region from x may overlap to be returned. Ignored if where is "gene".
Value
A character vector containing gene IDs of genes contained within the supplied regions
Author(s)
Aaron Statham
astatham/GOfish documentation built on May 10, 2019, 2:05 p.m.
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Description Usage Arguments Value Author(s)
Description
regionsToIDs
Usage
1 | regionsToIDs(x, txdb, where=c("TSS", "gene"), within=100)
|
Arguments
x |
A |
txdb |
A |
where |
If "TSS", only genes whose transcription start site overlaps the regions in |
within |
If |
Value
A character vector containing gene IDs of genes contained within the supplied regions
Author(s)
Aaron Statham
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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