Description Usage Arguments Value Author(s) Examples
getDMgenes
1 | getDMgenes(dmprobes, background)
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dmprobes |
Character vector of Illumina 450k IDs (e.g. "cg00000108"") constituting subset that is differentially methylated |
background |
Object of type "background" generated by |
Character vector of gene symbols
Tim J. Peters <Tim.Peters@csiro.au>
1 2 3 4 5 6 7 | ## Not run:
bg <- getDMgenes(rownames(my.betas), groups=c("TSS1500", "TSS200"))
dmgenes <- getDMgenes(my.dmprobes, bg)
#And then goseq:
runGoSeq(dmgenes, all.genes=names(bg$background), onto="GO:BP", genome="hg19", ID="geneSymbol", bias.data=bg$background)
## End(Not run)
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