getDMgenes: getDMgenes

In astatham/GOfish: Fishing for GO terms? SO ARE WE!

Description

getDMgenes

Usage

getDMgenes(dmprobes, background)

Arguments

dmprobes	Character vector of Illumina 450k IDs (e.g. "cg00000108"") constituting subset that is differentially methylated
background	Object of type "background" generated by create450kbg

Value

Character vector of gene symbols

Author(s)

Tim J. Peters <[e-mail]>

Examples

## Not run: 
bg <- getDMgenes(rownames(my.betas), groups=c("TSS1500", "TSS200"))
dmgenes <- getDMgenes(my.dmprobes, bg)
#And then goseq:
runGoSeq(dmgenes, all.genes=names(bg$background), onto="GO:BP", genome="hg19", ID="geneSymbol", bias.data=bg$background)

## End(Not run)

astatham/GOfish documentation built on May 10, 2019, 2:05 p.m.