Description Usage Arguments Value Author(s) Examples
create450kbg
1 | create450kbg(probes, groups=NULL)
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probes |
Character vector of Illumina 450k IDs (e.g. "cg00000108"") constituting background |
groups |
Character vector of one or combination of "TSS1500", "TSS200", "Body", "1stExon", "5'UTR" and "3'UTR" |
A list object of class "background" with 3 elements: "background" is a gene-symbol named vector of integers describing how many 450k probes in the constructed background are associated with that gene symbol; "probes" is a character vector of Illumina probe IDs constituting the background; "groups" is the argument passed to groups
Tim J. Peters <Tim.Peters@csiro.au>
1 2 3 4 | ## Not run:
#For example, creating a background of promoter probes only
bg <- create450kbg(my.beta.matrix, groups=c("TSS1500", "TSS200"))
## End(Not run)
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