Description Usage Arguments Value Author(s)
IDToGO
1 |
ids |
List of IDs to test for GO term enrichments |
universe |
List of IDs to use as the background. If |
ontology |
Which ontology to test |
ID |
Which type of ID - passed into |
speciesdb |
Which species database to use |
n |
How many GO terms to return after ordering. If 0 return all hits, if |
p.adj |
Which method of p value adjustment for multiple testing to use - for details see |
p.cutoff |
What p value cutoff to use when reporting significant GO terms. Ignored if |
orderBy |
Which of the 3 testing algorithms to order the results in the table by. This algorithms p value is the one used as a p value cutoff when |
tests |
Which of the 3 testing algorithms to use (and return the results of) in addition to the one chosen in |
Good question
Aaron Statham
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