Man pages for atienza-ipmc/isoswitch
What the Package Does (One Line, Title Case)
| celltype_features | Retrieve stats (sum, n_cells, avg) on transcripts expressed... |
| celltype_features_bulk | Compute number of genes and transcripts per cell type using... |
| compute_switches | Computes isoform switches for a specific gene in a marker... |
| dot-_gene_switches | Internal worker function for compute_switches |
| dot-_isoswitch_report.dotpot | Title |
| dot-_isoswitch_report.junctions | Title |
| dot-_isoswitch_report.locus | Title |
| dot-_isoswitch_report.umi_counts | Stacked barplot representing average raw transcript counts... |
| dot-_order_switches | Internal helper function to select the criteria used to sort... |
| format_switch_table | Clean up / format switch data frame for reports |
| gene_switch_table | Returns a html switch table for reports |
| iso_compute_stats | Compute stats on isoform expression relative to the total... |
| iso_preprocess | Preprocess isoform-level count matrix for isoform switch. |
| ISO_SWITCH_ALL | Find transcript markers of isoform switches |
| isoswitch_report | Gene multi-panel report, including gene locus and junction... |
| isoswitch_report_short | Stripped-down version of isoswitch_report with only barplot |
| plot_assay_stats | Plot summary stats on gene and isoform expression |
| plot_marker_matrix | Plot matrix of genes found per contrast |
| plot_marker_matrix_annotated | Plot matrix of genes found per contrast with row annotations |
| plot_marker_score | Volcano-like plot showing log_f2c vs p-value for genes found... |
| scale_isoform | Scales raw transcript counts relative to total gene... |
