celltype_features: Retrieve stats (sum, n_cells, avg) on transcripts expressed...
In atienza-ipmc/isoswitch: What the Package Does (One Line, Title Case)
celltype_features R Documentation
Retrieve stats (sum, n_cells, avg) on transcripts expressed in a given cell type
Transcripts with zero expression are filtered out.
Description
Retrieve stats (sum, n_cells, avg) on transcripts expressed in a given cell type
Transcripts with zero expression are filtered out.
Usage
celltype_features(obj, count_matrix, cell_type, features = NULL)
Arguments
obj
Seurat object
count_matrix
assay count matrix
cell_type
Identity
features
(optional) subset rows in matrix
Value
data.frame with features expressed in a cell type
(feature/gene_id/transcript_id) + cell_type, sum, n_cells, avg
atienza-ipmc/isoswitch documentation built on June 27, 2022, 12:22 p.m.
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| celltype_features | R Documentation |
Retrieve stats (sum, n_cells, avg) on transcripts expressed in a given cell type Transcripts with zero expression are filtered out.
Description
Retrieve stats (sum, n_cells, avg) on transcripts expressed in a given cell type Transcripts with zero expression are filtered out.
Usage
celltype_features(obj, count_matrix, cell_type, features = NULL)
Arguments
obj |
Seurat object |
count_matrix |
assay count matrix |
cell_type |
Identity |
features |
(optional) subset rows in matrix |
Value
data.frame with features expressed in a cell type (feature/gene_id/transcript_id) + cell_type, sum, n_cells, avg
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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