plot_assay_stats: Plot summary stats on gene and isoform expression

In atienza-ipmc/isoswitch: What the Package Does (One Line, Title Case)

Plot summary stats on gene and isoform expression

Description

Produces a 4 panel plot including a) Number of total genes and transcripts and percentage of genes expressing one or more isoforms. (b) Distribution of the number of isoforms per gene. (c) Relationship between the number of major isoforms (y-axis) and the total number of isoforms per gene (x-axis). (d) Pseudo-bulk estimation of number of genes expressed per cell type (each data point represents the aggregation of 10 cells)

Usage

plot_assay_stats(obj, assay, bin_size = 10)

Arguments

obj	Seurat object
assay	Assay to pull data from
bin_size	Bin size for pseudobulk aggregation of number of genes per cell

Value

ggplot object, patchwork of 4 plots

atienza-ipmc/isoswitch documentation built on June 27, 2022, 12:22 p.m.