isoswitch_report: Gene multi-panel report, including gene locus and junction...

In atienza-ipmc/isoswitch: What the Package Does (One Line, Title Case)

Gene multi-panel report, including gene locus and junction quantification, average UMI counts per isoform (p1), dotplot on scale data (p2) and violin plots of the switch. For genes with several switches the first one is selected by default, unless overridden with parameter i.

Description

Gene multi-panel report, including gene locus and junction quantification, average UMI counts per isoform (p1), dotplot on scale data (p2) and violin plots of the switch. For genes with several switches the first one is selected by default, unless overridden with parameter i.

Usage

isoswitch_report(obj, obj_assay, marker_list, gene, i = 1)

Arguments

obj	Seurat object
obj_assay	Assay to pull data from
marker_list	Output from ISO_SWITCH_ALL call
gene	Gene to report on
i	index of switch to represent

Value

ggplot object

atienza-ipmc/isoswitch documentation built on June 27, 2022, 12:22 p.m.