fg_extract_phenotypes: Extracts a set of phenotypes from a flowGraph object.

In aya49/flowGraph: Identifying differential cell populations in flow cytometry data accounting for marker frequency

Extracts a set of phenotypes from a flowGraph object.

Description

Extracts or removes a specified set of phenotypes from a flowGraph object.

Usage

fg_extract_phenotypes(fg, phenotypes)

Arguments

fg	flowGraph object.
phenotypes	A string vector of phenotype or cell population name labels.

Details

The summary in fg will not be modified; we recommend users recalculate them.

Value

flowGraph object.

See Also

flowGraph-class fg_get_feature_desc fg_merge fg_extract_samples fg_merge_samples

Examples

 no_cores <- 1
 data(fg_data_pos30)
 fg0 <- flowGraph(fg_data_pos30$count, class=fg_data_pos30$meta$class,
                 prop=FALSE, specenr=FALSE,
                 no_cores=no_cores)
 fg_get_feature_desc(fg0)

 fg <- fg_extract_phenotypes(fg0, fg_get_graph(fg0)$v$phenotype[1:10])
 fg_get_feature_desc(fg)

aya49/flowGraph documentation built on Feb. 4, 2024, 6:40 p.m.