flowGraphSubset_summary_adjust: Default for flowGraphSubset's summary_adjust
In aya49/flowGraph: Identifying differential cell populations in flow cytometry data accounting for marker frequency
View source: R/00_flowGraphSubset_constructor.R
flowGraphSubset_summary_adjust R Documentation
Default for flowGraphSubset's summary_adjust
Description
Default input for flowGraphSubset's summary_adjust
parameter. ONLY USE THIS OVER flowGraph IF: 1) your data set has more than
10,000 cell populations and you want to speed up your calculation time AND
2) you only have one set of classes you want to test on the
SAME SET OF SAMPLES (e.g. control vs experiment).
As flowGraphSubset does not
calculate the SpecEnr for all cell populations, so if you want to test other
sets of classes on the same samples, you will not be able to test all
possible cell populations on the new set of classes.
Usage
flowGraphSubset_summary_adjust()
Value
Default list parameter flowGraphSubset's summary_adjust parameter.
Examples
flowGraphSubset_summary_adjust()
aya49/flowGraph documentation built on Feb. 4, 2024, 6:40 p.m.
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View source: R/00_flowGraphSubset_constructor.R
| flowGraphSubset_summary_adjust | R Documentation |
Default for flowGraphSubset's summary_adjust
Description
Default input for flowGraphSubset's summary_adjust
parameter. ONLY USE THIS OVER flowGraph IF: 1) your data set has more than
10,000 cell populations and you want to speed up your calculation time AND
2) you only have one set of classes you want to test on the
SAME SET OF SAMPLES (e.g. control vs experiment).
As flowGraphSubset does not
calculate the SpecEnr for all cell populations, so if you want to test other
sets of classes on the same samples, you will not be able to test all
possible cell populations on the new set of classes.
Usage
flowGraphSubset_summary_adjust()
Value
Default list parameter flowGraphSubset's summary_adjust parameter.
Examples
flowGraphSubset_summary_adjust()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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