Files in aya49/flowGraph
Identifying differential cell populations in flow cytometry data accounting for marker frequency
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/00_data.R
R/00_flowGraphSubset_constructor.R
R/00_flowgraph_class.R
R/00_flowgraph_constructor.R
R/00_graph.R
R/00_helpers.R
R/01_flowgraph_accessors.R
R/01_flowgraph_modifiers.R
R/02_flowgraph_features.R
R/03_flowgraph_summary.R
R/04_flowgraph_plots.R
README.md
data/fg_data_fca.rda
data/fg_data_pos2.rda
data/fg_data_pos30.rda
fcs_processing_guide.R
inst/CITATION
inst/REFERENCES.bib
man/cell_type_layers.Rd
man/extract_markers.Rd
man/fg_add_feature.Rd
man/fg_add_summary.Rd
man/fg_clean_phen.Rd
man/fg_clear_features.Rd
man/fg_clear_summary.Rd
man/fg_data_fca.Rd
man/fg_data_pos2.Rd
man/fg_data_pos30.Rd
man/fg_extract_phenotypes.Rd
man/fg_extract_raw.Rd
man/fg_extract_samples.Rd
man/fg_feat_cumsum.Rd
man/fg_feat_edge_specenr.Rd
man/fg_feat_mean_class.Rd
man/fg_feat_node_prop.Rd
man/fg_feat_node_specenr.Rd
man/fg_feat_prop_edge.Rd
man/fg_get_feature.Rd
man/fg_get_feature_desc.Rd
man/fg_get_feature_means.Rd
man/fg_get_graph.Rd
man/fg_get_markers.Rd
man/fg_get_meta.Rd
man/fg_get_summary.Rd
man/fg_get_summary_desc.Rd
man/fg_get_summary_index.Rd
man/fg_get_summary_tables.Rd
man/fg_gsub_ids.Rd
man/fg_gsub_markers.Rd
man/fg_load.Rd
man/fg_merge.Rd
man/fg_merge_samples.Rd
man/fg_plot.Rd
man/fg_plot_box.Rd
man/fg_plot_pVSdiff.Rd
man/fg_plot_qq.Rd
man/fg_replace_meta.Rd
man/fg_rm_feature.Rd
man/fg_rm_summary.Rd
man/fg_save.Rd
man/fg_save_plots.Rd
man/fg_set_layout.Rd
man/fg_summary.Rd
man/flowGraph-class.Rd
man/flowGraph.Rd
man/flowGraphSubset.Rd
man/flowGraphSubset_summary_adjust.Rd
man/flowGraphSubset_summary_pars.Rd
man/fpurrr_map.Rd
man/get_child.Rd
man/get_eprop.Rd
man/get_paren.Rd
man/get_phen_list.Rd
man/get_phen_meta.Rd
man/ggdf.Rd
man/loop_ind_f.Rd
man/meandiff.Rd
man/ms_create.Rd
man/ms_psig.Rd
man/plot_gr.Rd
man/set_layout_graph.Rd
man/summary_table.Rd
man/test_c.Rd
man/time_output.Rd
man/tstr.Rd
tests/testthat.R
tests/testthat/test-basics.R
vignettes/flowGraph.Rmd
vignettes/flowGraph_example/README.md
vignettes/flowGraph_example/features/edges.csv
vignettes/flowGraph_example/features/edges/prop.csv
vignettes/flowGraph_example/features/nodes.csv
vignettes/flowGraph_example/features/nodes/SpecEnr.csv
vignettes/flowGraph_example/features/nodes/count.csv
vignettes/flowGraph_example/features/nodes/expect_prop.csv
vignettes/flowGraph_example/features/nodes/prop.csv
vignettes/flowGraph_example/sample_meta.csv
vignettes/flowGraph_example/summary_statistics/nodes.csv
vignettes/flowGraph_example/summary_statistics/nodes/pvalues.csv
vignettes/references.bib
