get_phen_list: Creates edge lists.

In aya49/flowGraph: Identifying differential cell populations in flow cytometry data accounting for marker frequency

Creates edge lists.

Description

Creates edge lists indicating relationships between cell populations given meta data on these cell populations produced by the get_phen_meta function.

Usage

get_phen_list(meta_cell = NULL, phen = NULL, no_cores = 1)

Arguments

meta_cell	A data frame containing meta data on cell populations as produced by the get_phen_meta function.
phen	A string vector of phenotype or cell population name labels. Cannot be set to NULL if meta_cell is set to NULL.
no_cores	An integer indicating how many cores to parallelize on.

Value

A list containing 'pchild', an edge list indicating where edges point to, 'pparen', an edge list indicating where edges point from, and 'edf', a data frame where each row contains the nodes an edge points 'from' and 'to'.

See Also

get_phen_meta cell_type_layers

Examples

   phen <- c('A+B-C+', 'A+B-', 'A+')
   get_phen_list(phen=phen)

aya49/flowGraph documentation built on Feb. 4, 2024, 6:40 p.m.