enhancedTissue: Give the list of the genes whose expression is enhanced for a...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Give the list of the genes whose expression is enhanced for a tissue at the given threshold.

Description

Give the list of the genes whose expression is enhanced for a tissue at the given threshold.

Usage

enhancedTissue(DF, fold = 5, detect = FALSE, threshold = 1,
  clean = TRUE)

Arguments

DF	numeric data.frame
fold	numeric; default: 5. Above which fold change a gene is considered as enhanced for a tissue
detect	numeric; default:0. Minimal level of expression to be considered detected
threshold	numeric; default:1. Minimal level of expression to be considered as possibly translated as protein
clean	logical; default: TRUE. Remove the genes that haven't show any enhancement

Value

named vector. Names give the gene ID (from the rownames) and the content is the tissue where the enhancement has been observed

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.