enrichedTissue: Give the list of the genes whose expression is enriched for a...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Give the list of the genes whose expression is enriched for a tissue at the given threshold.

Description

Give the list of the genes whose expression is enriched for a tissue at the given threshold.

Usage

enrichedTissue(DF, fold = 5, detect = FALSE, threshold = 1,
  verbose = TRUE, clean = TRUE)

Arguments

DF	numeric data.frame
fold	numeric. default: 5. Above which fold change a gene is considered as enriched for a tissue
detect	numeric; default:0. Minimal level of expression to be considered detected
threshold	numeric; default:1. Minimal level of expression to be considered as possibly translated as protein
verbose	logical; default:TRUE. Print to screen the number of genes that are enriched and aren't
clean	logical; default: TRUE. Remove the genes that haven't show any enrichment

Value

named vector. Names give the gene ID (from the rownames) and the content is the tissue where the enrichment has been observed

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.