extractDendroFromPlotTD: Extract the dendrogram from the heatmap based on...
In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI
extractDendroFromPlotTD R Documentation
Extract the dendrogram from the heatmap based on tissueDistance
Description
Extract the dendrogram from the heatmap based on tissueDistance
Usage
extractDendroFromPlotTD(DF, method = "ward.D", row = TRUE)
Arguments
DF
numeric data.frame; output of tissueDistance
method
character string, name of the agglomeration method to be used (hclust)
This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single",
"complete", "average" (= UPGMA), "mcquitty" (= WPGMA),
"median" (= WPGMC) or "centroid" (= UPGMC).
row
boolean. Default: TRUE. Whether to extract the dendrogram associated to the rows of the heatmap.
Value
a dendrogram
barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.
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| extractDendroFromPlotTD | R Documentation |
Extract the dendrogram from the heatmap based on tissueDistance
Description
Extract the dendrogram from the heatmap based on tissueDistance
Usage
extractDendroFromPlotTD(DF, method = "ward.D", row = TRUE)
Arguments
DF |
numeric data.frame; output of tissueDistance |
method |
character string, name of the agglomeration method to be used (hclust) This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC). |
row |
boolean. Default: TRUE. Whether to extract the dendrogram associated to the rows of the heatmap. |
Value
a dendrogram
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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