geneClassify.Q: Classify the genes in function of their expression to be used...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Classify the genes in function of their expression to be used with clustermq. Inspired from Uhlén et al. classification.

Description

Classify the genes in function of their expression to be used with clustermq. Inspired from Uhlén et al. classification.

Usage

geneClassify.Q(DF, detect = 0, groupNB, HighThreshold = 10,
  foldLow = 5, foldHigh = 50)

Arguments

DF	numeric data.frame
detect	numeric; default:0. Threshold to consider the gene expressed
groupNB	parameter
HighThreshold	numeric. Threshold above which the expression is considered high. default: 10 as it is in Uhlén et al. papers
foldLow	numeric. Expression fold to be considered as 'TissueSpecific'. Default:5
foldHigh	numeric. Expression fold to be considered as 'TissueSpecific.High'. Default: 50/

Value

vector of genes names

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.