View source: R/geneClassifications.R
geneClassify | R Documentation |
Classify the genes in function of their expression. Inspired from Uhlén et al. classification.
geneClassify(DF, detect = 0, groupNB, HighThreshold = 10,
foldLow = 5, foldHigh = 50)
DF |
numeric data.frame |
detect |
numeric; default:0. Threshold to consider the gene expressed |
groupNB |
parameter |
HighThreshold |
numeric. Threshold above which the expression is considered high. default: 10 as it is in Uhlén et al. papers |
foldLow |
numeric. Expression fold to be considered as 'TissueSpecific'. Default:5 |
foldHigh |
numeric. Expression fold to be considered as 'TissueSpecific.High'. Default: 50/ |
vector of genes names
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