heatmapAlpabet: Draw a customised heatmap where the different variables are...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Draw a customised heatmap where the different variables are sorted alphabetically

Description

Draw a customised heatmap where the different variables are sorted alphabetically

Usage

heatmapAlpabet(data, label.A, label.B, out.A, out.B, digits, key,
  col = barzinePhdR::colCbc(), sorting = TRUE, margins, ...,
  report = TRUE, index = "####", annot = "diag")

Arguments

data	correlation (numeric) data.frame to plot
label.A	character string. Name of the first data.frame used for the correlation matrix for the additional text.
label.B	character string. Name of the second data.frame used for the correlation matrix for the additional text.
out.A	character string for the plot (x-axis). Name of the first data.frame used for the correlation matrix
out.B	character string for the plot (y-axis). Name of the second data.frame used for the correlation matrix
digits	integer. default: 1. How many digits should be kept for the annotation.
key	boolean. default: TRUE. Whether the key of the heatmap should also be drawn.
col	color palette to use; default barzinePhdR::colC(), i.e. grDevices::colorRampPalette('aliceblue','darkcyan')
sorting	boolean; default: TRUE. Whether the input data.frame should be rordered alphabetically before being plotted.
margins	numeric vector of length 2 containing the margins (see par(mar= *)) for column and row names, respectively.
...	other parameters that can be handled by (gplots) heatmap.2
report	boolean. Default: TRUE. Output additional text (example for an (r)html report)
index	character string. default:"####" Allows to customise the level of indexing through markdown tags.
annot	character string. Default: 'diag'. Annotate only the diagonal of the heatmap with the value of correlation.

Value

a heatmap plot

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.