heatmapWithClustering: Draw a customised heatmap with marked clusters in the margins...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Draw a customised heatmap with marked clusters in the margins for a correlation matrix

Description

Draw a customised heatmap with marked clusters in the margins for a correlation matrix

Usage

heatmapWithClustering(data, label.A, label.B, out.A, out.B,
  dend = "none", margins, col = barzinePhdR::colCbc(), ...,
  report = TRUE, index = "####")

Arguments

data	correlation data.frame to plot
label.A	character string. Name of the first data.frame used for the correlation matrix for the additional text.
label.B	character string. Name of the second data.frame used for the correlation matrix for the additional text.
out.A	character string for the plot (x-axis). Name of the first data.frame used for the correlation matrix
out.B	character string for the plot (y-axis). Name of the second data.frame used for the correlation matrix
dend	character string that correspond to (gplots) heatmap.2 "dendrogram" indicating whether to draw 'none', 'row', 'column' or 'both' dendrograms. Defaults to 'both'. However, if Rowv (or Colv) is FALSE or NULL and dendrogram is 'both', then a warning is issued and Rowv (or Colv) arguments are honoured.
margins	numeric vector of length 2 containing the margins (see par(mar= *)) for column and row names, respectively.
col	color palette to use; default barzinePhdR::colC(), i.e. grDevices::colorRampPalette('aliceblue','darkcyan')
...	other parameters that can be handled by (gplots) heatmap.2
report	boolean. Default: TRUE. Output additional text (example for an (r)html report)
index	character string. default:"####" Allows to customise the level of indexing through markdown tags.

Value

a heatmap plot

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.