mixed.low: Provide the list of mixed low genes

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Provide the list of mixed low genes

Description

For each gene (rows) the number of samples/tissues (columns) in which they are expressed is given as the content of the named vector. Genes have to be consistantly lowly expressed (ie expressed lower a given threshold) when they are detected (ie genes have to be expressed above another given threshold).

Usage

mixed.low(DF, threshold = 10, detect = 1)

Arguments

DF	a numeric data.frame
threshold	Maximal level of expression when detected; default: 10.0
detect	numeric. Minimal level to be considered as detected; default: 1

Value

a named vector with the number of samples the genes has been detected as mixed low

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.