nameID: Retrieve gene symbols (hgnc) for Ensembl gene IDs with...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Retrieve gene symbols (hgnc) for Ensembl gene IDs with biomaRt

Description

function which has generated "gene.mapID"

Usage

nameID(geneID, out = "nameOnly", ens)

Arguments

geneID	vector of Ensembl gene ids
out	'all' for a named vector where the gene symbol are the content and the Ensembl ids are the names 'DF' for a data.frame where the first column contains the Ensembl ids and the second one the gene symbols. 'nameOnly' for the gene symbols only
ens	Formal class 'Mart' from package biomaRt

Value

gene symbols (with or without their corresponding Ensembl ids)

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.