plotTissuesDistance: Plot heatmap based on the result of tissueDistance

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Plot heatmap based on the result of tissueDistance

Description

Plot heatmap based on the result of tissueDistance

Usage

plotTissuesDistance(DF, method = "ward.D", notecol = "gray37",
  col = colorRampPalette(c("aliceblue", "darkcyan")))

Arguments

DF	numeric data.frame; output of tissueDistance
method	character string, name of the agglomeration method to be used (hclust) This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC).
notecol	character string. Name of the colour to use for the annotation within the heatmap.
col	function to be used to define the colour palette for (gplots) heatmap.2 default: colorRampPalette(c('aliceblue','darkcyan'))

Value

a heatmap (based on (gplots) heatmap.2)

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.