plot_distribDF: Plot the distribution for the columns of a data.frame...
In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

plot_distribDF

R Documentation

Plot the distribution for the columns of a data.frame according to different geometries (ggplot2)

Description

Plot the distribution for the columns of a data.frame according to different geometries (ggplot2)

Usage

plot_distribDF(DF, transformation = "log2", strip0 = TRUE,
  geom = "all", all = FALSE, debug = FALSE, verbose = FALSE,
  colourVal, limites, publish = TRUE, valueLab)

Arguments

`DF`	numerical data.frame
`transformation`	boolean; default: 'log2'. Whether if the data should be log2 transformed before being plotted
`strip0`	boolean; default: TRUE; Whether the 0 should be stripped from the data before plotting
`geom`	character string; default 'all'. Allows to chose between the different available geometries. 'all' output all available geometries. 'histogram' is for histogram, 'density' gives density plots. Anything else gives a boxplot.
`all`	boolean; default: TRUE. Whether all geometries should be plotted.
`debug`	boolean. Default: FALSE
`verbose`	boolean. Default: FALSE
`colourVal`	character vector. Colour palette.
`limites`	numeric vector. Allows to define the minimal and maximal boundaries to apply to the different plots.
`publish`	boolean. Whether to apply `theme_bw` to the plot(s).
`valueLab`	Character vector; allows to provide custom units if needed