sortUhlenClassInOne: Create one data.frame with the most relevant information for...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Create one data.frame with the most relevant information for each gene from previous gene classification ("Uhlén-like) analysis

Description

Create one data.frame with the most relevant information for each gene from previous gene classification ("Uhlén-like) analysis

Usage

sortUhlenClassInOne(notExpressed, threshold, NotDetected, Enriched,
  Enhanced, ubiHigh, ubiLow, mixedHigh, mixedLow, outfilename, gene.mapID,
  precomputed = FALSE)

Arguments

notExpressed	object, or filename
threshold	level of expression
NotDetected	object, or filename
Enriched	object, or filename
Enhanced	object, or filename
ubiHigh	object, or filename
ubiLow	object, or filename
mixedHigh	object, or filename for not expressed genes
mixedLow	object, or filename for not expressed genes
outfilename	filename for the resulting data.frame to be saved with
gene.mapID	Map of the gene names with their Ensembl ids
precomputed	logical, whether to search for recorded data

Value

a data.frame with all the genes annotated with their "Uhlén-like" classification. result can be saved directly to a file simultaneously

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.