tableGeneIDdesc: Retrieve additional gene information from biomaRt

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Retrieve additional gene information from biomaRt

Description

Retrieve additional gene information from biomaRt

Usage

tableGeneIDdesc(geneID, ens, output = "DF", otherdata = NULL,
  NoIDcol = TRUE)

Arguments

geneID	Ensembl gene ids to query
ens	a "Mart" object from biomaRt
output	"DF" for dataframe,"data.table" for a data.table::data.table,widget for a DT::datatable and "latex" for a latex formatted output
otherdata	other data that can be queried with biomaRt::getBM. See possible attributes=biomaRt::listAttributes(ens)
NoIDcol	logical; default=TRUE: remove the first column that contains the ensembl gene id

Value

a data.frame or a data.table or latex code or widget

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.