test_CorrMat_identical_different: Create the data.frame and can also test and plot the...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Create the data.frame and can also test and plot the comparison between the tissues of the first study with the second one

Description

Create the data.frame and can also test and plot the comparison between the tissues of the first study with the second one

Usage

test_CorrMat_identical_different(CorrMat, test = FALSE, plot = FALSE,
  publish = TRUE, x = 0.75, y = 0.1, ym = 0.02, textaxis = 15,
  titleaxis = 15, out = "DFtest", sep = ".",
  remove.identity = TRUE, reorder = TRUE)

Arguments

CorrMat	correlation matrix between two studies tissue expression (column correlation)
test	boolean. Default: FALSE. Whether a (Welch's) t-test should be performed between the group where the same tissue from each study are compared together and the group where one tissue from the first study is compared to a random tissue of the second tissue.
plot	boolean. Default: FALSE. Whether the Test should be plotted as well.
publish	boolean. Default:TRUE. Whether the theme theme_bw() should be applied to the plot
x	numeric. Default:0.75. x-axis of where to center the p-value.
y	numeric. Default:0.1. y-axis of where to center the p-value.
ym	numeric. Default: 0.02. y-axis of where to write the medium value of the correlation
textaxis	numeric. Default:15. Size of the text on the x-axis
titleaxis	numeric. Default:15. Size of the x-axis' title.
out	character string. Allows to pick the output. "DFtest" (default):
sep	character or character string. Default: '.'
remove.identity	boolean. Default:TRUE. Whether the cases where the same tissue from the first study and the second one should be removed.
reorder	boolean. Default: TRUE. Whether the data.frame should be order in decreasing order of the observed correlation

Value

depends on 'out'. Can be a data.frame, a plot, only the identical tissue comparisons, only the different tissue comparisons, ...

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.