topCommonGenes: Gives the number or the refenrences of shared genes by both...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Gives the number or the refenrences of shared genes by both studies out of a given number of highest genes to query.

Description

Gives the number or the refenrences of shared genes by both studies out of a given number of highest genes to query.

Usage

topCommonGenes(a, b, top = 0, filta, filtb, cutoff, LG = TRUE)

Arguments

a	data.frame with expression data for the first study
b	data.frame with expression data for the second study
top	positive integer. Number of genes to consider for the analysis; if 0 (default), all genes are considered.
filta	character vector or positive integer vector. rownames or indices of the rows to consider for the first study.
filtb	character vector or positive integer vector. rownames or indices of the rows to consider for the second study.
cutoff	numeric. cutoff under which the expression is considered as noise
LG	Boolean, topCommonGenes return the length if TRUE, else the list of genes is returned

Value

depends on LG. Number or the list of genes that are shared for the highest expressed

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.