topgenes.corClusterDraw | R Documentation |
Draw (after computation) the correlation matrix for the correlation of the two studies' tissues (columns)
topgenes.corClusterDraw(a, b, filta = NA, same = FALSE, filtb = NA,
top = 0, use = "pairwise.complete.obs", method = "pearson",
nameA = deparse(substitute(a)), nameB = deparse(substitute(b)),
png = TRUE)
a |
data.frame with expression data for the first study |
b |
data.frame with expression data for the second study |
filta |
character vector or positive integer vector. colnames or indices of the columns to consider for the first study. |
same |
boolean. Default:FALSE. Whether the tissues (columns) from the second study should be identical to the first study. |
filtb |
character vector or positive integer vector. colnames or indices of the columns to consider for the second study. |
top |
positive integer. Number of genes to consider for the analysis; if 0 (default), all genes are considered. |
use |
character string expliciting how missing values should be handled. can be either "everything", "all.obs", "complete.obs", "na.or.complete", or "pairwise.complete.obs" (default). To fasten the process if there is no missing value, use "everything". |
method |
character string. Method for base::cor, either "pearson", "spearman" or "kendall". |
nameA |
character string to use for identifying the first study |
nameB |
character string to use for identifying the second study |
png |
boolean. Default:TRUE. Whether to save the figure as a png instead of the standard output |
a figure, either on the standard output or as png
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