wrap.compute_permuted_corQ_save: Wrapper to run the random shuffling of the gene correlation...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Wrapper to run the random shuffling of the gene correlation as several jobs on LSF

Description

Wrapper to run the random shuffling of the gene correlation as several jobs on LSF

Usage

wrap.compute_permuted_corQ_save(DF1, DF2, method, out.df1, out.df2,
  repTimes, seed, nJobs, save = TRUE,
  importPath = "~mitra/homeshare/R321/ebits", ...)

Arguments

DF1	numeric data.frame for the first study
DF2	numeric data.frame for the second study
method	a character string indicating which correlation coefficient is to be computed. One of "pearson", "spearman", "kendall".
out.df1	character string. Label for the first study. Part of the filename.
out.df2	character string. Label for the second study. Part of the filename.
repTimes	positive integer. Number of randomisation to create. e.g. 10,000
seed	random seed to maintain repeatability
nJobs	positive integer. Number of simultaneous jobs.
save	boolean. Default: TRUE. The function tries to save in any case, this argument defines if there is already a file with the same name if it should be overwrite or not.
importPath	path to ebits — newest versions are found in M. Schubert's github profile
...	other parameters for ebits::hpc or saveToFile

Value

Split the several randomisation of the genes correlation as different jobs on LSF

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.