addStudyGDSSample: This function create the gds file fields related to the study...

In belleau/aicsPaper: Accurate Inference of Genetic Ancestry from Cancer Sequencing

This function create the gds file fields related to the study and the sample in it.

Description

TODO

Usage

addStudyGDSSample(gds, pedDF, batch = 1, listSamples = NULL, studyDF)

Arguments

gds	a gds object.
pedDF	a data.frame with the sample info. Must have the column sample.id, Name.ID, sex, pop.group, superPop and batch. The unique id of pedDF is Name.ID and the row.name is Name.ID too.
batch	a integer corresponding
listSamples	a array with the sample from pedDF to keep
studyDF	a data.frame with at least the column study.id, study.desc and study.platform

Value

TODO

Author(s)

Pascal Belleau, Astrid Deschênes and Alexander Krasnitz

Examples

# TODO
gds <- "Demo GDS TODO"

belleau/aicsPaper documentation built on Aug. 4, 2022, 1:12 a.m.