gds2tfamSample: create a file tfam file for plink from the gds file

In belleau/aicsPaper: Accurate Inference of Genetic Ancestry from Cancer Sequencing

create a file tfam file for plink from the gds file

Description

TODO

Usage

gds2tfamSample(gds, listSample, sampleANNO, pedOUT)

Arguments

gds	an object of class gdsn.class (a GDS node) or gds.class (a GDS file) TODO
listSample	a array with the sample to keep
sampleANNO	a data.frame with at least column sex and the name must be sample.id
pedOUT	TODO a PATH and file name to the output file

Value

TODO a vector of numeric

Author(s)

Pascal Belleau, Astrid Deschênes and Alexander Krasnitz

Examples

# TODO
gds <- "Demo GDS TODO"

belleau/aicsPaper documentation built on Aug. 4, 2022, 1:12 a.m.