computeLOHBlocksDNAChr: TODO

In belleau/aicsPaper: Accurate Inference of Genetic Ancestry from Cancer Sequencing

TODO

Description

TODO

Usage

computeLOHBlocksDNAChr(gds, chrInfo, snp.pos, chr, genoN = 1e-04)

Arguments

gds	an object of class SNPRelate::SNPGDSFileClass, a SNP GDS file.
chrInfo	a vector chrInfo[i] = length(Hsapiens[[paste0("chr", i)]]) Hsapiens library(BSgenome.Hsapiens.UCSC.hg38)
snp.pos	a data.frame containing TODO.
chr	a single integer for the chromosome.
genoN	a single numeric between 0 and 1 representing TODO. Default: 0.0001.

Value

a data.frame containing:

• chr TODO

• start TODO

• end TODO

• logLHR TODO

• LH1 TODO

• LM1 TODO

• homoScore TODO

• nbSNV TODO

• nbPruned TODO

• nbNorm TODO

• LOH TODO

Author(s)

Pascal Belleau, Astrid Deschênes and Alexander Krasnitz

Examples

## Path to the demo pedigree file is located in this package
data.dir <- system.file("extdata", package="RAIDS")

## TODO

belleau/aicsPaper documentation built on Aug. 4, 2022, 1:12 a.m.