basePCASample: TODO

In belleau/aicsPaper: Accurate Inference of Genetic Ancestry from Cancer Sequencing

TODO

Description

TODO

Usage

basePCASample(gds, listSample.Ref = NULL, listSNP = NULL, np = 1)

Arguments

gds	an object of class SNPRelate::SNPGDSFileClass, a SNP GDS file.
listSample.Ref	A vector of string corresponding to the sample.ids
listSNP	the list of snp.id keep
np	a single positive integer representing the number of threads. Default: 1.

Value

TODO a list with with two objects pca.unrel -> snpgdsPCAClass and a snp.load -> snpgdsPCASNPLoading

Author(s)

Pascal Belleau, Astrid Deschênes and Alexander Krasnitz

Examples

## Path to the demo pedigree file is located in this package
data.dir <- system.file("extdata", package="RAIDS")

## TODO

belleau/aicsPaper documentation built on Aug. 4, 2022, 1:12 a.m.