pruning1KG.Chr: Find the pruned snv in 1KG by chr

In belleau/aicsPaper: Accurate Inference of Genetic Ancestry from Cancer Sequencing

Find the pruned snv in 1KG by chr

Description

TODO

Usage

pruning1KG.Chr(
  gds,
  method = "corr",
  listSamples = NULL,
  slide.max.bp.v = 5e+05,
  ld.threshold.v = sqrt(0.1),
  np = 1,
  verbose.v = FALSE,
  chr = NULL,
  minAF = NULL,
  outPref = "pruned_1KG",
  keepObj = FALSE
)

Arguments

gds	an object of class SNPRelate::SNPGDSFileClass, a SNP GDS file.
method	a character string TODO . Default: "corr".
listSamples	TODO
slide.max.bp.v	TODO
ld.threshold.v	TODO
np	TODO . Default: NULL.
verbose.v	a logical specifying if the function must provide more information about the process. Default: FALSE.
chr	TODO
minAF	TODO
outPref	TODO
keepObj	a logical specifying if the function must save the the processed information into a RDS object. Default: FALSE.

Value

NULL invisibly.

Author(s)

Pascal Belleau, Astrid Deschênes and Alexander Krasnitz

Examples

## Path to the demo pedigree file is located in this package
data.dir <- system.file("extdata", package="RAIDS")

## TODO

belleau/aicsPaper documentation built on Aug. 4, 2022, 1:12 a.m.