simSpatial: This function simulates a spatial hair snare mark recapture...
In benaug/Mbmisscap: Mbmisscap

Description Usage Arguments Value

This function simulates a spatial hair snare mark recapture experiment with hair sample subsampling and failed DNA identification.

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simSpatial(N, occ, lambda, sigma, locs, buff, btype, lambda_h,
  lambda_c = NULL, delta = NULL, kappa_h = NULL, kappa_t = NULL,
  cluster = FALSE, kappa_c = NULL, alpha = NULL)

`N`	an integer that is the true population size
`occ`	an integer that is the number of capture occasions to simulate
`lambda`	lambda rate parameter at 0 for hazard gaussian detection function
`sigma`	the spatial scale parameter
`locs`	a J x 2 matrix of trap locations
`buff`	an integer specifying the buffer for simulating the population
`btype`	a character string specifying the type of behavioral response to capture Current options are "global" for a global trap response and "trap" for a trap-specific response. "trap" currently only works with traptype=multi.
`lambda_h`	a positive value specifying the parameter for the zero-truncated Poisson hair deposition process (S_ijk\|W_ijk=1)
`lambda_c`	a positive value specifying the parameter for the zero-truncated Poisson cluster deposition process if cluster=TRUE
`delta`	a numeric value between 0 and 1 specifying the probability a hair sample will be retained in the subsample. This is used if subsampling is done by pooling samples on each occasion and taking a simple random sample.
`kappa_h`	an integer specifying the number of hair samples to retain per occasion-trap if cluster=FALSE or per occasion-trap-cluster if cluster=TRUE. Used in sub-hair and sub-cluster methods
`kappa_t`	an integer specifying the number of traps per occasion at which to retain kappa_h hair samples. If no value is specified no trap-level subsampling occurs. Only works when cluster=FALSE. Used in the sub-trap method
`cluster`	a logical indicating whether or not to simulate from the cluster model (multiple clusters per individual-occasion-trap)
`kappa_c`	an integer specifying the number of clusters per trap-occasion at which to retain kappa_h hair samples. Only works when cluster=TRUE. Sub-cluster method.
`alpha`	a numeric value between 0 and 1 specifying the probability that a hair sample produces an individual identification