R/AnnotationGx-data.R

In bhklab/AnnotationGx: AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

#' gdsc_sampleMetadata is some preprocessed sample metadata from the GDSC dataset
#'
#' A preprocessed version of the sample metadata from the GDSC dataset. 
#' This dataset is provided in the package to test the functionality of the package.
#' The original dataset can be downloaded from the CancerRxGene website.
#'
#' @format A data table with 5 columns and 1001 rows.
#' \describe{
#'  \item{GDSC.Sample_Name}{`char` The name of the cell line in the GDSC dataset.}
#'  \item{GDSC.COSMIC_ID}{`int` The COSMIC ID of the cell line in the GDSC dataset.}
#' }
#' @usage data(GDSC_sampleMetadata)
#' @examples
#' data(GDSC_sampleMetadata)
#' head(GDSC_sampleMetadata)
#' @source https://www.cancerrxgene.org/
"GDSC_sampleMetadata"

#' GDSC_treatmentMetadata is some preprocessed treatment metadata from the GDSC dataset
#' 
"GDSC_treatmentMetadata"


#' CCLE_sampleMetadata is some preprocessed sample metadata from the CCLE dataset
#' 
"CCLE_sampleMetadata"

#' CCLE_treatmentMetadata is some preprocessed treatment metadata from the CCLE dataset
#' 
"CCLE_treatmentMetadata"

#' CTRP_sampleMetadata is some preprocessed sample metadata from the CTRP dataset
#' 
"CTRP_sampleMetadata"

#' CTRP_treatmentMetadata is some preprocessed treatment metadata from the CTRP dataset
#' 
"CTRP_treatmentMetadata"

#' gCSI_sampleMetadata is some preprocessed sample metadata from the gCSI dataset
#' 
"gCSI_sampleMetadata"

#' gCSI_treatmentMetadata is some preprocessed treatment metadata from the gCSI dataset
#' 
"gCSI_treatmentMetadata"