showSigAnnot-PharmacoSig-method: Show the Annotations of a signature object
In bhklab/PharmacoGx: Analysis of Large-Scale Pharmacogenomic Data

showSigAnnot,PharmacoSig-method

R Documentation

Show the Annotations of a signature object

Description

This funtion prints out the information about the call used to compute the drug signatures, and the session info for the session in which the computation was done. Useful for determining the exact conditions used to generate signatures.

Usage

## S4 method for signature 'PharmacoSig'
showSigAnnot(object)

Arguments

object

An object of the PharmacoSig Class, as returned by drugPerturbationSig or drugSensitivitySig

Value

Prints the PharmacoGx Signatures annotations to the output stream, and returns invisible NULL.

Examples

data(GDSCsmall)
drug.sensitivity <- drugSensitivitySig(GDSCsmall, mDataType="rna",
             nthread=1, features = fNames(GDSCsmall, "rna")[1])
showSigAnnot(drug.sensitivity)

bhklab/PharmacoGx documentation built on April 18, 2024, 3:13 a.m.