nkis: Gene expression, annotations and clinical data from van de...
In bhklab/genefu: Computation of Gene Expression-Based Signatures in Breast Cancer
nkis R Documentation
Gene expression, annotations and clinical data from van de Vijver et al. 2002
Description
This dataset contains (part of) the gene expression, annotations and clinical data as published in van de Vijver et al. 2002.
Usage
data(nkis)
Format
nkis is a dataset containing three matrices:
data.nkis: Matrix containing gene expressions as measured by Agilent technology (dual-channel, oligonucleotides)
annot.nkis: Matrix containing annotations of Agilent microarray platform
demon.nkis: Clinical information of the breast cancer patients whose tumors were hybridized
Details
This dataset represent only partially the one published by van de Vijver et al. in 2008. Indeed, only part of the patients (150) and gene expressions (922) in data.nkis.
Source
http://www.nature.com/nature/journal/v415/n6871/full/415530a.html
References
M. J. van de Vijver and Y. D. He and L. van't Veer and H. Dai and A. M. Hart and D. W. Voskuil and G. J. Schreiber and J. L. Peterse and C. Roberts and M. J. Marton and M. Parrish and D. Atsma and A. Witteveen and A. Glas and L. Delahaye and T. van der Velde and H. Bartelink and S. Rodenhuis and E. T. Rutgers and S. H. Friend and R. Bernards (2002) "A Gene Expression Signature as a Predictor of Survival in Breast Cancer", New England Journal of Medicine, 347(25):1999–2009
bhklab/genefu documentation built on Nov. 30, 2024, 9:03 p.m.
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| nkis | R Documentation |
Gene expression, annotations and clinical data from van de Vijver et al. 2002
Description
This dataset contains (part of) the gene expression, annotations and clinical data as published in van de Vijver et al. 2002.
Usage
data(nkis)
Format
nkis is a dataset containing three matrices:
data.nkis: Matrix containing gene expressions as measured by Agilent technology (dual-channel, oligonucleotides)
annot.nkis: Matrix containing annotations of Agilent microarray platform
demon.nkis: Clinical information of the breast cancer patients whose tumors were hybridized
Details
This dataset represent only partially the one published by van de Vijver et al. in 2008. Indeed, only part of the patients (150) and gene expressions (922) in data.nkis.
Source
http://www.nature.com/nature/journal/v415/n6871/full/415530a.html
References
M. J. van de Vijver and Y. D. He and L. van't Veer and H. Dai and A. M. Hart and D. W. Voskuil and G. J. Schreiber and J. L. Peterse and C. Roberts and M. J. Marton and M. Parrish and D. Atsma and A. Witteveen and A. Glas and L. Delahaye and T. van der Velde and H. Bartelink and S. Rodenhuis and E. T. Rutgers and S. H. Friend and R. Bernards (2002) "A Gene Expression Signature as a Predictor of Survival in Breast Cancer", New England Journal of Medicine, 347(25):1999–2009
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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